Healthy Flatbread Pizza with Pesto and Tomatoes

(5.0)
By Judy Capodanno
Updated 1/8/2026
Dietitian Reviewed: Jane Schwartz, RDN, CLT
Approved for These Diets:
Mediterranean | Vegetarian
Heart Healthy Tomato and Pesto Pizza
Photo Credit: Baldwin Publishing Staff Photographer

Craving fresh, crispy, garden-fresh pizza but want to skip the heavy, greasy delivery? This Healthy Flatbread Pizza with Pesto and Tomatoes is the ultimate 30-minute solution for busy weeknights or a quick solo lunch. By swapping traditional dough for whole-grain flatbread and using a vibrant, nutrient-dense homemade pesto, you get all the decadent, melty satisfaction of a classic pizza with a much cleaner nutritional profile. This recipe is as fun to make as it is to eat, making it a perfect activity to get the kids involved in healthy cooking.

Total Time
30 minutes
Servings
4
Calories
288

What Makes These Healthy Flatbread Pizzas with Pesto and Tomatoes Healthy

Unlike standard delivery pizzas that are often high in refined flour and sodium, this recipe utilizes whole-grain flatbread to provide a steady source of fiber. The homemade pesto is packed with heart-healthy monounsaturated fats from olive oil and antioxidant-rich basil, offering a nutrient-dense base that supports cardiovascular health while delivering hearty flavor.

Key Health Highlights

  • Fiber-Rich Whole Grains: Using whole-grain flatbread instead of white flour dough supports healthy digestion and keeps you full longer.
  • Heart-Healthy Fats: The olive oil and garlic in the pesto provide monounsaturated fats and sulfur compounds known for supporting heart health.
  • Lycopene Boost: Fresh tomatoes are a primary source of lycopene, an antioxidant linked to reduced risk of heart disease.
  • Saturated Fat Control: Using part-skim mozzarella and a measured amount of Parmesan cheese provides a rich flavor while keeping saturated fat in check.
  • Fresh Herb Nutrients: Fresh basil contains vitamins K and A, contributing to bone health and immune support.

FAQs About Healthy Flatbread Pizza with Pesto and Tomatoes

Absolutely! Pesto makes an excellent alternative to traditional red sauce, providing a rich, herbaceous base that pairs perfectly with the crispy texture of flatbread.

Generally, yes. Flatbreads are thinner than traditional pizza dough, which typically means fewer calories and carbohydrates per serving, especially when using a whole-grain variety.

Preheating your oven to a high temperature (425°F) and avoiding "wet" toppings (like extra tomato juice) ensures the flatbread crisps up quickly before the moisture can soak in.

Yes! Kids love the mild flavor of mozzarella and the fun of "personal pizzas." If they are sensitive to green sauce, you can swirl the pesto into a small amount of tomato sauce to ease them into the flavor.

More Healthy Pizza & Flatbread Variations

Homemade pizza is easier than you think, and better for your health and your wallet! Try any of these simple recipes for the pizza flavor you crave.

Quick & Healthy Vegetarian Sides

Round out your meal with these tasty, healthy sides that are a great way to get more veggies into your diet.

Ingredients

Recipe yields 4 servings

Helpful How-To Video

Directions

  1. Step 1

    Place the basil, olive oil, garlic, salt and black pepper in a food processor or blender and pulse until smooth. Stir in the Parmesan cheese.

  2. Step 2

    Make the pizzas: Preheat the oven to 425°. Spread 1 tablespoon pesto on each flatbread.(Reserve the remaining pesto for another use.) Divide tomato slices and additional basil among each flatbread. Sprinkle the flatbreads with mozzarella. Bake for 15 minutes, or until cheese is melted.

Nutrition Facts

Serving Size:
1 flatbread

288
Calories
16
g
Fat
11
mg
Cholesterol
673
mg
Sodium
28
g
Carbs
3
g
Sat. Fat
10
g
Fiber
14
g
Protein

Alternative Cooking Methods

  • Air Fryer Instructions: Place one flatbread at a time in the air fryer basket. Cook at 375°F for 5–8 minutes until the cheese is golden and the edges are crisp.
  • Grilling Instructions: For a smoky summer version, grill the flatbreads over medium-high heat. Grill one side for 1–2 minutes, flip, add toppings, and close the grill lid for 3–4 minutes until the cheese melts.

Serving & Storage Tips

  • Serving: Serve immediately while the cheese is bubbly. For extra crunch, let the flatbreads rest on a wire rack for 1 minute before slicing to prevent the bottom from getting soggy.
  • Storage: Store leftovers in an airtight container in the refrigerator for up to 2 days.
  • Reheating: To maintain the crispy texture, reheat in a 350°F oven or a toaster oven for 5–7 minutes. Avoid the microwave, as it will make the flatbread soft and chewy.

What to Serve with Flatbread Pizza:

Since these flatbreads are light and crispy, they pair beautifully with salads and vegetables. Try serving them alongside a bowl of Minestrone Soup, Mediterranean Chopped Salad,  or some Roasted Brussels Sprouts.

Toppings Twist:

Try any of these toppings for a variation on the recipe:

  • Chicken Pesto Flatbread: Add 1/2 cup of shredded rotisserie chicken breast before baking for a lean protein boost.
  • Veggie Supreme: Add thinly sliced red onions, bell peppers, or baby spinach under the cheese for more fiber and nutrients.
  • Mediterranean Style: Top with a few Kalamata olives and a sprinkle of dried oregano after baking.

Ingredient Substitutions

If you can't find whole-grain flatbread, whole-wheat naan or thin whole-wheat pita bread work perfectly as a crispy base.

While homemade is best for controlling sodium, a high-quality store-bought pesto can be used in a pinch; just look for a brand with a short ingredient list.

For a dairy-free version, swap the mozzarella for a cashew-based vegan mozzarella or sprinkle with nutritional yeast for a "cheesy" finish.

Sun-dried tomatoes (packed in water) can replace fresh tomatoes for a more intense, tangy flavor profile.

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